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normal Error backmapping RNA file

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4 years 10 months ago - 4 years 10 months ago #8168 by daniloboskovic
Error backmapping RNA file was created by daniloboskovic
I am trying to backmap an RNA file from the tutorial as stated in the tutorial but i am getting error atom N not found in buiding block while combining tdb and rtp when trying to generate a topology file. Im using Gromacs 2018.7. Its really annoying me. It also says

Start terminus U-501: NH3+
End terminus A-511: COO-

for an RNA.
Last edit: 4 years 10 months ago by daniloboskovic.

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4 years 10 months ago #8170 by peterkroon
Replied by peterkroon on topic Error backmapping RNA file
Hi,

could you post the terminal residues of the CG and backmapped AA in the PDB files? In addition, could you post the full command line you used for backmapping and the full output it produces?

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