normal Silica nanoparticle

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1 year 6 months ago #9505 by tarraga
Silica nanoparticle was created by tarraga
Hello community,
I am new in simulation with Martini. Does anybody know a good tutorial to create a sphere of silica material?
I would appreciate any information!!
Wilson

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1 year 6 months ago #9506 by bart
Replied by bart on topic Silica nanoparticle
Make a model of sillica and use a script to build a sphere at the right density. I think you question is too vague to give more detailed assistance. What did you already try? What is it you do not understand, etc. etc.

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1 year 6 months ago #9513 by tarraga
Replied by tarraga on topic Silica nanoparticle
Hello again,
Thank you for your answer. I have another question.
I was trying to martinize all atoms from a unit cell of silica (alpha cristibalite) but the scrip.py available in one of the tutorial (lysozime) recognized the silica atoms as HETATM, which I do not want.
Is there any way to considered the HETATM atoms or do I need to manually coarse grained my unit cell?
Thank you again.
Wilson

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