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newbies in CGMD
- syahidah
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12 years 8 months ago #769
by syahidah
Replied by syahidah on topic newbies in CGMD
sir,
the coarse-grained structure was obtained however the fg2cg.xtc file is empty.what doest it mean?
besides, when i want to do the self assembly of my structure (DPC), the gromacs give me "could not open: course.xtc". according to one forum, it is relate to the input files, but i can't find which input files that give me the problem. (*i just follow the steps in the bilayer assembly tutorial, but using my own structure)
you kind reply are much appreciated,
thank you, sir.
best,
syahida
the coarse-grained structure was obtained however the fg2cg.xtc file is empty.what doest it mean?
besides, when i want to do the self assembly of my structure (DPC), the gromacs give me "could not open: course.xtc". according to one forum, it is relate to the input files, but i can't find which input files that give me the problem. (*i just follow the steps in the bilayer assembly tutorial, but using my own structure)
you kind reply are much appreciated,
thank you, sir.
best,
syahida
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- xavier
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12 years 8 months ago #770
by xavier
Before sending more information you should try yourself to find out what you did wrong. That might take a few minutes to a few days! But it is how one learns!
Good luck
XAvier.
Replied by xavier on topic newbies in CGMD
Obviously you made a mistake somewhere! Without the command line and a better description of what you did no one can help you!syahidah wrote: sir,
the coarse-grained structure was obtained however the fg2cg.xtc file is empty.what doest it mean?
Before sending more information you should try yourself to find out what you did wrong. That might take a few minutes to a few days! But it is how one learns!
The message tells you that the problem comes from course.xtc! This is a system issue or may be the file is actually missing. This sounds like a trivial system issue!besides, when i want to do the self assembly of my structure (DPC), the gromacs give me "could not open: course.xtc". according to one forum, it is relate to the input files, but i can't find which input files that give me the problem. (*i just follow the steps in the bilayer assembly tutorial, but using my own structure)
Good luck
XAvier.
you kind reply are much appreciated,
thank you, sir.
best,
syahida
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- syahidah
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12 years 8 months ago #782
by syahidah
Replied by syahidah on topic newbies in CGMD
sir,
may i know how did you get the fg.xtc file that is implemented in the lipid_tutorial's refine folder?
thank you, sir
best,
syahida
may i know how did you get the fg.xtc file that is implemented in the lipid_tutorial's refine folder?
thank you, sir
best,
syahida
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