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Force Fields
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Proteins
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Protocol for determination of monomers
Protocol for determination of monomers
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JBinder
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Topic Author
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Fresh Boarder
2 years 6 months ago #9168
by JBinder
Dear Martini Team,
i have a question regarding the reparameterization of the aggregation levels of soluble proteins in Martini3.
In your main paper you described the increased monomer percentage in a box of villin molecules. My two questions are:
1. How do you define monomer/multimer: Through number of contacts below a certain cutoff distance?
2. For how long do these contacts have to exists to count as dimer- in other word is there any resolution in terms of time ?
Thank you very much for your replies !
Jonas
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Force Fields
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Proteins
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Protocol for determination of monomers
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