1. Force Fields
  3. Other Molecules

Other Molecules 131 topics

Any question about molecules that doesn't fit in the other forums? Post it here.

Subject Replies / Views Last Post
unanswered
add a new polymer with SP0 bead type
Topic started 3 months 2 weeks ago, by Leila_sharifi
Last Post 3 months 2 weeks ago
by Leila_sharifi
Replies:0
Views:658
Last Post by Leila_sharifi
3 months 2 weeks ago
unanswered
Peptide/protein Staples
Topic started 5 months 3 weeks ago, by kmcg
Last Post 5 months 3 weeks ago
by kmcg
Replies:0
Views:556
Last Post by kmcg
5 months 3 weeks ago
unanswered
Perfluorobutane
Topic started 6 months 1 week ago, by BSB57
Last Post 6 months 1 week ago
by BSB57
Replies:0
Views:323
Last Post by BSB57
6 months 1 week ago
normal
how to add MGCL2 to my system containing capsid( protein) and DNA ?
Topic started 6 months 3 weeks ago, by sharifi
Last Post 6 months 3 weeks ago
by MatsMD
Replies:1
Views:555
Last Post by MatsMD
6 months 3 weeks ago
unanswered
Martini v2 to Martini v3 Bead Types
Topic started 6 months 3 weeks ago, by rdp135
Last Post 6 months 3 weeks ago
by rdp135
Replies:0
Views:308
Last Post by rdp135
6 months 3 weeks ago
normal
How to use Martini3 to simulate a protein in ammonium chloride solution
Topic started 10 months 1 week ago, by Kalindu
Last Post 9 months 4 weeks ago
by riccardo
Replies:1
Views:1008
Last Post by riccardo
9 months 4 weeks ago
normal
increase force in SmallMolecule.itp results no change !
Topic started 10 months 3 weeks ago, by Zz
Last Post 10 months 3 weeks ago
by vainikka
Replies:1
Views:429
Last Post by vainikka
10 months 3 weeks ago
unanswered
Nonbonded interaction between differnt bead types
Topic started 11 months 1 week ago, by palashb
Last Post 11 months 1 week ago
by palashb
Replies:0
Views:457
Last Post by palashb
11 months 1 week ago
unanswered
Use of bond vs constraints for BENZENE
Topic started 11 months 1 week ago, by sdutta
Last Post 11 months 1 week ago
by sdutta
Replies:0
Views:497
Last Post by sdutta
11 months 1 week ago
normal
Trivalent ions
Topic started 11 months 4 weeks ago, by human369
Last Post 11 months 3 weeks ago
by riccardo
Replies:1
Views:514
Last Post by riccardo
11 months 3 weeks ago
unanswered
F16 force filed download that build in the MAD website
Topic started 1 year 2 months ago, by guoli
Last Post 1 year 2 months ago
by guoli
Replies:0
Views:743
Last Post by guoli
1 year 2 months ago
normal
Modeling Zinc ions
Topic started 7 years 5 months ago, by Prunotto
Last Post 1 year 3 months ago
by VH
Replies:6
Views:9115
Last Post by VH
1 year 3 months ago
unanswered
other molecules
Topic started 1 year 4 months ago, by Nada_TAIB
Last Post 1 year 4 months ago
by Nada_TAIB
Replies:0
Views:796
Last Post by Nada_TAIB
1 year 4 months ago
normal
Hydration free energy of Lidocaine
Topic started 1 year 4 months ago, by yogi@martini
Last Post 1 year 4 months ago
by riccardo
Replies:1
Views:550
Last Post by riccardo
1 year 4 months ago
unanswered
Ion masses in Martini 3.0
Topic started 1 year 5 months ago, by shalinijr
Last Post 1 year 5 months ago
by shalinijr
Replies:0
Views:711
Last Post by shalinijr
1 year 5 months ago
unanswered
Parametrization for zinc ions in a metalloprotein (MARTINI 3)
Topic started 1 year 8 months ago, by fmeireles
Last Post 1 year 8 months ago
by fmeireles
Replies:0
Views:1192
Last Post by fmeireles
1 year 8 months ago
normal
Martini 3 Ions clumping together
Topic started 1 year 10 months ago, by AlexBW
Last Post 1 year 9 months ago
by AlexBW
Replies:2
Views:1174
Last Post by AlexBW
1 year 9 months ago
normal
Bond connectivity for Methyl benzoate
Topic started 1 year 10 months ago, by shalinijr
Last Post 1 year 10 months ago
by shalinijr
Replies:3
Views:868
Last Post by shalinijr
1 year 10 months ago
normal
Update to Martini 3 parameters
Topic started 1 year 11 months ago, by FJSP22
Last Post 1 year 11 months ago
by FJSP22
Replies:2
Views:1042
Last Post by FJSP22
1 year 11 months ago
normal
How to assign bead types and parameters for fructose-1,6-biphosphate
Topic started 1 year 11 months ago, by chandrimaM
Last Post 1 year 11 months ago
by MatsMD
Replies:3
Views:970
Last Post by MatsMD
1 year 11 months ago
  1. Force Fields
  3. Other Molecules
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