Tools 309 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
Go-MARTINI3 and protein protein interactions Topic started 1 month 3 weeks ago, by shaukat_i Last Post 1 month 2 weeks ago by adolfom	Replies:1 Views:499	Last Post by adolfom 1 month 2 weeks ago
cg_bonds script to back-map my trajectory Topic started 1 month 3 weeks ago, by anna_banana Last Post 1 month 3 weeks ago by anna_banana	Replies:0 Views:210	Last Post by anna_banana 1 month 3 weeks ago
Backmapping after Martini3 Topic started 1 month 3 weeks ago, by shaukat_i Last Post 1 month 3 weeks ago by shaukat_i	Replies:0 Views:148	Last Post by shaukat_i 1 month 3 weeks ago
Sphingomyelin and other lipids in insane.py? Topic started 8 years 5 months ago, by gpantel Last Post 3 months 1 week ago by zwy	Replies:4 Views:8853	Last Post by zwy 3 months 1 week ago
Truncated heavy chains on antibody using martinize.py Topic started 3 months 2 weeks ago, by amjadkchy Last Post 3 months 2 weeks ago by amjadkchy	Replies:0 Views:228	Last Post by amjadkchy 3 months 2 weeks ago
Martinize2 error in building the system Topic started 3 months 2 weeks ago, by kesavan Last Post 3 months 2 weeks ago by kesavan	Replies:0 Views:165	Last Post by kesavan 3 months 2 weeks ago
Martinize2 error - Building system for 100 chains Topic started 4 months 1 week ago, by kesavan Last Post 4 months 1 week ago by kesavan	Replies:2 Views:359	Last Post by kesavan 4 months 1 week ago
Backward mapping fails with index out of range error Topic started 5 months 2 weeks ago, by khZhang Last Post 5 months 2 weeks ago by khZhang	Replies:0 Views:383	Last Post by khZhang 5 months 2 weeks ago
Backmapping multiple chain systems leads to broken molecules Topic started 7 months 1 week ago, by amin_sagar Last Post 7 months 1 week ago by amin_sagar	Replies:0 Views:681	Last Post by amin_sagar 7 months 1 week ago
Martini & gmx energy Topic started 9 months 1 day ago, by peter Last Post 9 months 1 day ago by peter	Replies:0 Views:804	Last Post by peter 9 months 1 day ago
Looking for charmm AA cholesterol structure matching backward map file Topic started 3 years 8 months ago, by cneale Last Post 9 months 3 weeks ago by moon	Replies:5 Views:2775	Last Post by moon 9 months 3 weeks ago
Martinizing cofactors Topic started 10 months 1 week ago, by marcol Last Post 10 months 1 week ago by marcol	Replies:0 Views:568	Last Post by marcol 10 months 1 week ago
initram.sh dependecy error Topic started 10 months 1 week ago, by omkar73 Last Post 10 months 1 week ago by riccardo	Replies:3 Views:549	Last Post by riccardo 10 months 1 week ago
Assignment between atoms and CG beads Topic started 10 months 1 week ago, by FJSP22 Last Post 10 months 1 week ago by FJSP22	Replies:0 Views:480	Last Post by FJSP22 10 months 1 week ago
cg_bonds-v5.tcl Topic started 2 years 1 month ago, by JBinder Last Post 1 year 2 days ago by morris	Replies:7 Views:2338	Last Post by morris 1 year 2 days ago
martinize2 does not recognize RNAs residues Topic started 1 year 1 week ago, by willyef Last Post 1 year 6 days ago by fgrunewald	Replies:1 Views:586	Last Post by fgrunewald 1 year 6 days ago
Martinize trajectory? Topic started 1 year 1 week ago, by mason Last Post 1 year 1 week ago by riccardo	Replies:1 Views:524	Last Post by riccardo 1 year 1 week ago
Insane explote my protein .- Topic started 1 year 1 month ago, by bqAlvii Last Post 1 year 1 month ago by bqAlvii	Replies:0 Views:618	Last Post by bqAlvii 1 year 1 month ago
Martinize2 protein with more than 99,999 atoms Topic started 1 year 3 months ago, by TomasV Last Post 1 year 3 months ago by TomasV	Replies:2 Views:1040	Last Post by TomasV 1 year 3 months ago
backward.py fails with "list index out of range" Topic started 6 years 3 weeks ago, by scm177 Last Post 1 year 3 months ago by Saman Fatihi 1 2	Replies:32 Views:11.3k	Last Post by Saman Fatihi 1 year 3 months ago

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Tools 309 topics