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martinize.py
- atefeh.ghlzd
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3 years 5 months ago #8763
by atefeh.ghlzd
martinize.py was created by atefeh.ghlzd
Hello,
I want to simulate http://cgmartini.nl/index.php/tutorials-general-introduction-gmx5/tutorial-ht-peptide-gmx5#Create-CG-systemthis tutorial.
I tried to run the following command, but I faced an error.
./martinize.py -f ../2_Creating_coordinates/TYR-XXX-TYR_aa.pdb -name TYR-XXX-TYR -o TYR-XXX-TYR.top -x TYR-XXX-TYR.pdb -ff martini22 -nt -ss EEE
File "martinize.py", line 2040
print item
^
SyntaxError: Missing parentheses in call to 'print'. Did you mean print(item)?
What should I do?
Thank you.
I want to simulate http://cgmartini.nl/index.php/tutorials-general-introduction-gmx5/tutorial-ht-peptide-gmx5#Create-CG-systemthis tutorial.
I tried to run the following command, but I faced an error.
./martinize.py -f ../2_Creating_coordinates/TYR-XXX-TYR_aa.pdb -name TYR-XXX-TYR -o TYR-XXX-TYR.top -x TYR-XXX-TYR.pdb -ff martini22 -nt -ss EEE
File "martinize.py", line 2040
print item
^
SyntaxError: Missing parentheses in call to 'print'. Did you mean print(item)?
What should I do?
Thank you.
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- riccardo
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3 years 5 months ago #8764
by riccardo
Replied by riccardo on topic martinize.py
Python 2 vs python 3 problem?
"print item" works in python2 but not in python3. Try running the script with python2.
"print item" works in python2 but not in python3. Try running the script with python2.
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- atefeh.ghlzd
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3 years 5 months ago #8765
by atefeh.ghlzd
Replied by atefeh.ghlzd on topic martinize.py
You hit it on the nose :))
Thank you so much.
Thank you so much.
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