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do-order-gmx5.py
- atefeh.ghlzd
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3 years 1 month ago #8888
by atefeh.ghlzd
do-order-gmx5.py was created by atefeh.ghlzd
Hi,
In order to calculate the order parameter for the mixed membrane which consists of DPPC and POPG I used "do-order-gmx5.py", it seems the result for DPPC is not reasonable and also this tool cannot produce any output for POPG lipids.
How can I use this tool appropriately?
I really appreciate any help you can provide.
In order to calculate the order parameter for the mixed membrane which consists of DPPC and POPG I used "do-order-gmx5.py", it seems the result for DPPC is not reasonable and also this tool cannot produce any output for POPG lipids.
How can I use this tool appropriately?
I really appreciate any help you can provide.
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- vainikka
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3 years 1 month ago #8889
by vainikka
Replied by vainikka on topic do-order-gmx5.py
Hi,
As the download page states, the software is not extensively tested and is definitely not guaranteed to work on every system. For instructions and ideas, you should read the script and its comments. It has clearly written comments on how to use it, and which lipids it recognizes (for instance, it does not know what POPG is). There are also some comments on how to modify the script to recognize other lipids.
As the download page states, the software is not extensively tested and is definitely not guaranteed to work on every system. For instructions and ideas, you should read the script and its comments. It has clearly written comments on how to use it, and which lipids it recognizes (for instance, it does not know what POPG is). There are also some comments on how to modify the script to recognize other lipids.
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