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Non-standard residue to CG model
- aashuph16221
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2 years 11 months ago #8955
by aashuph16221
Non-standard residue to CG model was created by aashuph16221
Dear CG martini community.
I am investigating the oligomer protein assembly through molecular dynamics simulation.
My protein has Heme and other non-standard residues.
I am using an amber force field. I have done successfully an all-atom molecular dynamics simulation.
I want to know how can generate the CG model for my complete system.
when I using the martinize.py script it generates only standard amino acid.
Can you guide me how can generate the force field parameter of other covalent and non-covalent bounded non-standard residues?
Kindly guide me
Best regards
Aashish
I am investigating the oligomer protein assembly through molecular dynamics simulation.
My protein has Heme and other non-standard residues.
I am using an amber force field. I have done successfully an all-atom molecular dynamics simulation.
I want to know how can generate the CG model for my complete system.
when I using the martinize.py script it generates only standard amino acid.
Can you guide me how can generate the force field parameter of other covalent and non-covalent bounded non-standard residues?
Kindly guide me
Best regards
Aashish
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- riccardo
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2 years 10 months ago #8962
by riccardo
Replied by riccardo on topic Non-standard residue to CG model
Please don't spam the forum. See here for my answer:
cgmartini.nl/index.php/component/kunena/...in-the-cg-model#8960
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