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  3. Martini 3 open-beta

Martini 3 open-beta 41 topics

Welcome to Martini 3's own little forum. Don't forget to post the relevant version number to the questions and/or remarks.

Subject Replies / Views Last Post
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logP calculation using martini3
Topic started 5 months 2 weeks ago, by yogi@martini
Last Post 3 months 4 weeks ago
by riccardo
Replies:1
Views:1125
Last Post by riccardo
3 months 4 weeks ago
unanswered
Modeling Urea Molecule
Topic started 5 months 2 weeks ago, by shalinijr
Last Post 5 months 2 weeks ago
by shalinijr
Replies:0
Views:236
Last Post by shalinijr
5 months 2 weeks ago
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bulid a cg model for organics molecule
Topic started 9 months 2 weeks ago, by LeMEI1
Last Post 8 months 4 weeks ago
by riccardo
Replies:5
Views:1140
Last Post by riccardo
8 months 4 weeks ago
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How to deal with water in a large system simulation
Topic started 9 months 1 week ago, by Junb
Last Post 9 months 1 week ago
by riccardo
Replies:1
Views:594
Last Post by riccardo
9 months 1 week ago
unanswered
Advice for ER membrane: Martini2 or Martini3 ?
Topic started 9 months 2 weeks ago, by ttubiana
Last Post 9 months 2 weeks ago
by ttubiana
Replies:0
Views:573
Last Post by ttubiana
9 months 2 weeks ago
normal
charged small molecule parameterization
Topic started 10 months 6 days ago, by Junb
Last Post 10 months 5 days ago
by Junb
Replies:2
Views:722
Last Post by Junb
10 months 5 days ago
unanswered
System crash when using more than 5 CPUs
Topic started 11 months 3 weeks ago, by jpacalon
Last Post 11 months 3 weeks ago
by jpacalon
Replies:0
Views:1109
Last Post by jpacalon
11 months 3 weeks ago
normal
Martini3 parameters for PIP lipids
Topic started 1 year 5 months ago, by anjukris
Last Post 1 year 1 month ago
by anjukris
Replies:2
Views:4784
Last Post by anjukris
1 year 1 month ago
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Arg and Lys Exclusions for Nonbonded Interaction
Topic started 1 year 2 months ago, by mason
Last Post 1 year 1 month ago
by riccardo
Replies:2
Views:739
Last Post by riccardo
1 year 1 month ago
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Martinize2 for Solvated System
Topic started 1 year 2 months ago, by mason
Last Post 1 year 2 months ago
by mason
Replies:2
Views:910
Last Post by mason
1 year 2 months ago
unanswered
GoMartini issue
Topic started 1 year 5 months ago, by aishwaryts
Last Post 1 year 5 months ago
by aishwaryts
Replies:0
Views:1593
Last Post by aishwaryts
1 year 5 months ago
unanswered
SCFix - Martini 3.0.0
Topic started 1 year 5 months ago, by Marius
Last Post 1 year 5 months ago
by Marius
Replies:0
Views:842
Last Post by Marius
1 year 5 months ago
normal
Is bbsc.sh script necessary for trasmembrane proteins?
Topic started 1 year 5 months ago, by azadehalavi
Last Post 1 year 5 months ago
by sebastian
Replies:1
Views:1211
Last Post by sebastian
1 year 5 months ago
unanswered
unstable protein-peptide binding with Martini 3
Topic started 1 year 6 months ago, by qiaobf
Last Post 1 year 6 months ago
by qiaobf
Replies:0
Views:814
Last Post by qiaobf
1 year 6 months ago
unanswered
Nucleic acid simulation with Martini3
Topic started 1 year 6 months ago, by mount
Last Post 1 year 6 months ago
by mount
Replies:0
Views:827
Last Post by mount
1 year 6 months ago
unanswered
Martini 2 vs Martini 3
Topic started 1 year 6 months ago, by peter
Last Post 1 year 6 months ago
by peter
Replies:0
Views:1093
Last Post by peter
1 year 6 months ago
normal
Increasing Protein-Water Interaction Strength & martinize.py
Topic started 1 year 8 months ago, by nkho
Last Post 1 year 8 months ago
by riccardo
Replies:1
Views:1757
Last Post by riccardo
1 year 8 months ago
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bbsc.sh script - errors
Topic started 3 years 6 months ago, by poojaric
Last Post 1 year 8 months ago
by jessicab
Replies:4
Views:3231
Last Post by jessicab
1 year 8 months ago
unanswered
martini3 water and ions problems using insane
Topic started 1 year 8 months ago, by mordurx
Last Post 1 year 8 months ago
by mordurx
Replies:0
Views:938
Last Post by mordurx
1 year 8 months ago
normal
Atomtype mismatch : Martini 3 beta vs Martini 3
Topic started 1 year 9 months ago, by sayantan0510
Last Post 1 year 9 months ago
by riccardo
Replies:1
Views:1497
Last Post by riccardo
1 year 9 months ago
  1. General topics
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