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unanswered Simulated Annealing

  • anirbanzz
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13 years 2 months ago #584 by anirbanzz
Simulated Annealing was created by anirbanzz
Hi,

i have converted my CG model to FG model successfully and have run SA according to the tutorial for 40000, 1000, 5000 and 60000 steps with varrying SA time parameters. But still some residues of my protein are there in the unfavourable regions of Ramachandran plot and are not showing proper secondary structure formation. Should I continue SA and which parameters should be altered in the mdp file in order to achieve a good FG model?
Any suggestion is welcome.

Thanks,

Anirban

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