General topics (454 topics)

Category

Martini Philosophy (37 topics)

Why 4-to-1 mapping? Why a limited number of particle types?
Re: Box was shifted at least 10 ti ...
by Imamul
1 month 1 day ago

Tools (150 topics)

Scripts, programs and software to use with Martini simulations.
Analysis of membrane proteins ...
by James Starlight
2 weeks 4 days ago

mdp Options (64 topics)

Simulation parameters for Martini simulations.
Re: Modeling of the shear flow on ...
by peterkroon
3 weeks 1 day ago

Other (106 topics)

Everything that doesn't fit anywhere else.
Re: Pore formation of antimicobial ...
by roshanak
3 months 3 days ago

Tutorial (90 topics)

Issues about the Martini tutorial
Re: Lipid bilayer tutorial - npt p ...
by sajjad.ir
4 weeks 2 days ago

Multiscaling (1 topics)

Combining different levels of resolution.
Re: Bonds shifting while going fro ...
by peterkroon
4 months 3 weeks ago

Dry Martini (6 topics)

Martini with implicit water.
Re: Dry Martini aggregation
by peterkroon
11 months 19 hours ago

Force Fields (301 topics)

Category

Lipids (90 topics)

Everything that has to do with the original Martini lipid forcefield.
Mapping lipids
by almeida
1 week 5 days ago

Proteins (94 topics)

Everything that has to do with the Martini extension for proteins and peptides.
Re: hole in the simulation box
by edesantis
2 weeks 3 days ago

Sugars (2 topics)

Everything concerning the Sweet Martini sugar extension.
Re: parametes for guluronic acid r ...
by Clement
3 years 1 month ago

Water (23 topics)

Everything about water, since (almost) every biological system contains water.
Re: Water froze at 303 K in Gromac ...
by peterkroon
1 year 2 weeks ago

Nucleotides (15 topics)

Everything that has to do with the Martini extension to nucleotides.
Martini tutorials: DNA
by ChristinaL
3 months 6 days ago

Other Molecules (77 topics)

Any question about molecules that doesn't fit in the other forums? Post it here.
Re: Parametrizing a new molecule b ...
by Pim
3 days 18 hours ago
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