General topics (437 topics)


Martini Philosophy (35 topics)

Why 4-to-1 mapping? Why a limited number of particle types?
ssd file
by roshanak
5 days 11 hours ago

Tools (146 topics)

Scripts, programs and software to use with Martini simulations.
Re: Visualizing a CG protein in VM ...
by peterkroon
3 weeks 6 days ago

mdp Options (59 topics)

Simulation parameters for Martini simulations.
Re: a concern on MD production spp ...
by albumns
5 days 16 hours ago

Other (104 topics)

Everything that doesn't fit anywhere else.
Re: Inhomogeneity (lumping) of ver ...
by visvaldas
1 week 1 day ago

Tutorial (86 topics)

Issues about the Martini tutorial
Re: gromacs 5 support problem for ...
by peterkroon
3 weeks 5 days ago

Multiscaling (1 topics)

Combining different levels of resolution.
Re: Bonds shifting while going fro ...
by peterkroon
1 month 3 days ago

Dry Martini (6 topics)

Martini with implicit water.
Re: Dry Martini aggregation
by peterkroon
7 months 1 week ago

Force Fields (293 topics)


Lipids (88 topics)

Everything that has to do with the original Martini lipid forcefield.
Re: Inserting position restraints
by bart
3 weeks 1 day ago

Proteins (89 topics)

Everything that has to do with the Martini extension for proteins and peptides.
Re: multiple chain
by albumns
3 days 15 hours ago

Sugars (2 topics)

Everything concerning the Sweet Martini sugar extension.
Re: parametes for guluronic acid r ...
by Clement
2 years 9 months ago

Water (23 topics)

Everything about water, since (almost) every biological system contains water.
Re: Water froze at 303 K in Gromac ...
by peterkroon
8 months 4 weeks ago

Nucleotides (14 topics)

Everything that has to do with the Martini extension to nucleotides.
Re: Martini parameters for RNA
by bt12d026
3 months 3 weeks ago

Other Molecules (77 topics)

Any question about molecules that doesn't fit in the other forums? Post it here.
Re: Parameterizing new molecule
by riccardo
2 weeks 6 days ago
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