General topics (462 topics)

Category

Martini Philosophy (38 topics)

Why 4-to-1 mapping? Why a limited number of particle types?
Re: Reason for different number of ...
by jbarnoud
1 month 1 week ago

Tools (157 topics)

Scripts, programs and software to use with Martini simulations.
Slow gmx tools
by nanogod
3 days 2 hours ago

mdp Options (64 topics)

Simulation parameters for Martini simulations.
Re: Modeling of the shear flow on ...
by peterkroon
2 months 2 weeks ago

Other (106 topics)

Everything that doesn't fit anywhere else.
Re: Pore formation of antimicobial ...
by roshanak
5 months 1 day ago

Tutorial (90 topics)

Issues about the Martini tutorial
Re: Lipid bilayer tutorial - npt p ...
by sajjad.ir
2 months 3 weeks ago

Multiscaling (1 topics)

Combining different levels of resolution.
Re: Bonds shifting while going fro ...
by peterkroon
6 months 2 weeks ago

Dry Martini (6 topics)

Martini with implicit water.
Re: Dry Martini aggregation
by peterkroon
1 year 4 weeks ago

Force Fields (301 topics)

Category

Lipids (90 topics)

Everything that has to do with the original Martini lipid forcefield.
Re: Surfactants
by riccardo
1 month 6 days ago

Proteins (94 topics)

Everything that has to do with the Martini extension for proteins and peptides.
Re: hole in the simulation box
by edesantis
2 months 2 weeks ago

Sugars (2 topics)

Everything concerning the Sweet Martini sugar extension.
Re: parametes for guluronic acid r ...
by Clement
3 years 3 months ago

Water (23 topics)

Everything about water, since (almost) every biological system contains water.
Re: Water froze at 303 K in Gromac ...
by peterkroon
1 year 2 months ago

Nucleotides (15 topics)

Everything that has to do with the Martini extension to nucleotides.
Martini tutorials: DNA
by ChristinaL
5 months 4 days ago

Other Molecules (77 topics)

Any question about molecules that doesn't fit in the other forums? Post it here.
Re: ATP parameters
by SNEHA
5 days 5 hours ago
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