General topics (530 topics)

Category

Martini Philosophy (41 topics)

Why 4-to-1 mapping? Why a limited number of particle types?
Re: create sekundär struktur and l ...
by Newguy
1 month 3 weeks ago

Tools (184 topics)

Scripts, programs and software to use with Martini simulations.
Re: Backward.py error while submit ...
by riccardo
1 day 8 hours ago

mdp Options (76 topics)

Simulation parameters for Martini simulations.
Re: CG simulations of a membrane p ...
by bart
1 week 6 days ago

Other (122 topics)

Everything that doesn't fit anywhere else.
Re: elnedyn modifications
by bart
1 week 6 days ago

Tutorial (95 topics)

Issues about the Martini tutorial
Re: How much can I increase the -r ...
by peterkroon
2 weeks 13 hours ago

Multiscaling (1 topics)

Combining different levels of resolution.
Re: Bonds shifting while going fro ...
by peterkroon
1 year 5 months ago

Dry Martini (7 topics)

Martini with implicit water.
Re: make a lipid Bilayer
by bart
1 month 4 weeks ago

Martini 3 open-beta (4 topics)

Welcome to Martini 3's own little forum. Don't forget to post the relevant version number to the questions and/or remarks.
Re: Sugar models
by bart
5 days 12 hours ago

Force Fields (335 topics)

Category

Lipids (103 topics)

Everything that has to do with the original Martini lipid forcefield.
Re: sphingomylein topology
by mandar
1 week 5 days ago

Proteins (102 topics)

Everything that has to do with the Martini extension for proteins and peptides.
Re: martinze adds one more atom to ...
by tfischb
2 months 2 weeks ago

Sugars (2 topics)

Everything concerning the Sweet Martini sugar extension.
Re: parametes for guluronic acid r ...
by Clement
4 years 2 months ago

Water (26 topics)

Everything about water, since (almost) every biological system contains water.
Re: Convert atomistic water to MAR ...
by zidarko
2 months 1 week ago

Nucleotides (16 topics)

Everything that has to do with the Martini extension to nucleotides.
Re: Problem generating RNA topolog ...
by ifaustino
1 month 1 week ago

Other Molecules (86 topics)

Any question about molecules that doesn't fit in the other forums? Post it here.
Re: solvent molecules
by Pim
4 weeks 2 days ago
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