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unanswered g_dist in Martini

  • tonylee33
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11 years 3 months ago #1352 by tonylee33
g_dist in Martini was created by tonylee33
Hello everyone! I am trying to use Martini force field to do some steered MD simulation (on gmx). However, when I use g_dist to measure the distance between two groups after pulling, the distance is quite different from all atom simulation. The difference can be 0.3 nm. Even for relaxation, the difference is still this big. I guess it is the mass definition for atom types in all atom simulation is different from Martini, however, no idea how to change it. Anyone has some experience? Thanks a lot!!!

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