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PEGylated proteins

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Last Updated: Monday, 30 November 2020 09:14

PEGylated-protein.jpgEnhancement of proteins by PEGylation is an active area of research. To gain a better insight into these interactions or even make predictions, we published a protocol on how to simulate PEGylated proteins using the latest iteration of Martini:

F. Grünewald, P.C. Kroon, P.C.T. Souza, S.J. Marrink. Protocol for Simulations of PEGylated Proteins with Martini 3. Structural Genomics: Methods in Molecular Biology 2199:315-335, 2021. reprint

Peptidoglycan model

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Last Updated: Wednesday, 28 October 2020 10:21
A Martini model of bacterial cell wall peptidoglycan is now available, thanks to the nice work of Vaiwala et al. The parameters and other files can be found here.

Death is just the beginning ....

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Last Updated: Saturday, 24 October 2020 08:52

Check out a nice paper from Lucendo et al, in PNAS, showing how TM helix dimerization plays a role in apoptosis. Featuring the Martini 3 beta release, corroborated by atomistic simulations and experimental data.

MDVoxelSegmentation

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Last Updated: Saturday, 17 October 2020 13:06

Working with large systems containing multiple bilayers or other dynamic macroscopic objects? Check out the new MDVoxelSegmentation tool.