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  3. Martini Philosophy

Martini Philosophy 82 topics

Why 4-to-1 mapping? Why a limited number of particle types?

Subject Replies / Views Last Post
unanswered
Martini3 bead sizes
Topic started 7 months 1 week ago, by gpoon
Last Post 7 months 1 week ago
by gpoon
Replies:0
Views:1770
Last Post by gpoon
7 months 1 week ago
normal
MARTINI3 CG model for perfluorooctane (C8F18)
Topic started 1 year 5 months ago, by hsk81123
Last Post 7 months 2 weeks ago
by Imamul
Replies:3
Views:979
Last Post by Imamul
7 months 2 weeks ago
normal
Doubt regarding bead-type U
Topic started 1 year 1 week ago, by sdutta
Last Post 1 year 3 days ago
by riccardo
Replies:1
Views:1717
Last Post by riccardo
1 year 3 days ago
normal
A small doubt regarding actual bead mass and default considered bead mass
Topic started 1 year 2 weeks ago, by sdutta
Last Post 1 year 3 days ago
by sdutta
Replies:2
Views:637
Last Post by sdutta
1 year 3 days ago
unanswered
Dealing with amide rotation
Topic started 1 year 1 week ago, by mdsimulationgroup
Last Post 1 year 1 week ago
by mdsimulationgroup
Replies:0
Views:546
Last Post by mdsimulationgroup
1 year 1 week ago
normal
charged small molecule bead mapping
Topic started 1 year 1 month ago, by benzenekim
Last Post 1 year 1 month ago
by vainikka
Replies:1
Views:929
Last Post by vainikka
1 year 1 month ago
unanswered
charged small molecule bead mapping
Topic started 1 year 1 month ago, by benzenekim
Last Post 1 year 1 month ago
by benzenekim
Replies:0
Views:497
Last Post by benzenekim
1 year 1 month ago
normal
Ghost bead in martini
Topic started 1 year 2 months ago, by Mohammad
Last Post 1 year 2 months ago
by vainikka
Replies:1
Views:908
Last Post by vainikka
1 year 2 months ago
normal
NPT vs. NPT ensemble for equilibration in AA compared to coarse-grained?
Topic started 1 year 6 months ago, by Anna Stephens
Last Post 1 year 5 months ago
by riccardo
Replies:1
Views:1561
Last Post by riccardo
1 year 5 months ago
normal
Are bilayers always simulated in the Isobaric ensemble?
Topic started 1 year 5 months ago, by Anna Stephens
Last Post 1 year 5 months ago
by riccardo
Replies:1
Views:752
Last Post by riccardo
1 year 5 months ago
normal
bead change in martini2 and martini2
Topic started 1 year 10 months ago, by FJSP22
Last Post 1 year 9 months ago
by riccardo
Replies:4
Views:2586
Last Post by riccardo
1 year 9 months ago
normal
How to set the bond force constant?
Topic started 10 years 6 months ago, by Leliel
Last Post 1 year 10 months ago
by yogi@martini
Replies:6
Views:7342
Last Post by yogi@martini
1 year 10 months ago
normal
Link Information not getting reflected in itp file #415
Topic started 2 years 3 weeks ago, by subha
Last Post 2 years 3 weeks ago
by riccardo
Replies:2
Views:1610
Last Post by riccardo
2 years 3 weeks ago
unanswered
Martini 3: to use PME or reaction-field
Topic started 2 years 2 months ago, by nanogod
Last Post 2 years 2 months ago
by nanogod
Replies:0
Views:1626
Last Post by nanogod
2 years 2 months ago
unanswered
Atom to bead mapping of alkyl chains
Topic started 2 years 4 months ago, by Jassu
Last Post 2 years 4 months ago
by Jassu
Replies:0
Views:1996
Last Post by Jassu
2 years 4 months ago
normal
configurational entropy
Topic started 2 years 5 months ago, by mw00847
Last Post 2 years 4 months ago
by riccardo
Replies:1
Views:1391
Last Post by riccardo
2 years 4 months ago
normal
O=S=O and NH2 beads
Topic started 2 years 8 months ago, by Shadman Lakmehsari
Last Post 2 years 6 months ago
by riccardo
Replies:3
Views:2239
Last Post by riccardo
2 years 6 months ago
normal
Martini 3: Bead Interactions and Link Headers Structure Data Requirements
Topic started 2 years 7 months ago, by Luke Kruse
Last Post 2 years 6 months ago
by riccardo
Replies:1
Views:1674
Last Post by riccardo
2 years 6 months ago
unanswered
Bead mapping: Martini 2.1 vs 2.2
Topic started 2 years 7 months ago, by peter
Last Post 2 years 7 months ago
by peter
Replies:0
Views:1304
Last Post by peter
2 years 7 months ago
normal
Secondary structure analysis with MARTINI
Topic started 3 years 10 months ago, by gypsy
Last Post 2 years 9 months ago
by neetusingh
Replies:3
Views:121k
Last Post by neetusingh
2 years 9 months ago
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