Tools 311 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
Order parameters calculation Topic started 6 years 6 months ago, by saeedimasine Last Post 6 years 6 months ago by saeedimasine	Replies:0 Views:2923	Last Post by saeedimasine 6 years 6 months ago
Slow gmx tools Topic started 6 years 6 months ago, by nanogod Last Post 6 years 6 months ago by peterkroon	Replies:1 Views:2611	Last Post by peterkroon 6 years 6 months ago
backward job failed Topic started 6 years 6 months ago, by albumns Last Post 6 years 6 months ago by riccardo	Replies:3 Views:4214	Last Post by riccardo 6 years 6 months ago
backwards energy minimization Topic started 6 years 7 months ago, by naveen Last Post 6 years 6 months ago by riccardo	Replies:1 Views:3501	Last Post by riccardo 6 years 6 months ago
insane.py lipid bead names don't match with itp file Topic started 6 years 7 months ago, by wlsong Last Post 6 years 7 months ago by wlsong	Replies:0 Views:2709	Last Post by wlsong 6 years 7 months ago
backward failing on multiple molecules Topic started 6 years 7 months ago, by ram74656 Last Post 6 years 7 months ago by ram74656	Replies:2 Views:2998	Last Post by ram74656 6 years 7 months ago
Visualisation of the secondary structure in BENDIX Topic started 6 years 7 months ago, by James Starlight Last Post 6 years 7 months ago by James Starlight	Replies:0 Views:2570	Last Post by James Starlight 6 years 7 months ago
Analysis of membrane proteins oligomerisation in MARTINI models Topic started 6 years 9 months ago, by James Starlight Last Post 6 years 9 months ago by James Starlight	Replies:0 Views:2623	Last Post by James Starlight 6 years 9 months ago
Martinizing lipid molecules Topic started 8 years 2 months ago, by jmondal Last Post 6 years 9 months ago by riccardo	Replies:3 Views:6139	Last Post by riccardo 6 years 9 months ago
insane.py with old lipid topologies Topic started 6 years 10 months ago, by Marlon Last Post 6 years 10 months ago by Marlon	Replies:2 Views:3275	Last Post by Marlon 6 years 10 months ago
Questions on insane.py Topic started 6 years 11 months ago, by F.Keller Last Post 6 years 11 months ago by F.Keller	Replies:0 Views:4353	Last Post by F.Keller 6 years 11 months ago
forward mapping for Charmm36 TIP3 Topic started 7 years 1 month ago, by ngandhi Last Post 7 years 1 month ago by peterkroon	Replies:1 Views:3057	Last Post by peterkroon 7 years 1 month ago
forward mapping for Charmm36 TIP3 Topic started 7 years 1 month ago, by ngandhi Last Post 7 years 1 month ago by tsjerk	Replies:3 Views:3169	Last Post by tsjerk 7 years 1 month ago
Martinize - solvated neutralized system Topic started 7 years 1 month ago, by simoncks1994v2 Last Post 7 years 1 month ago by tsjerk	Replies:1 Views:3319	Last Post by tsjerk 7 years 1 month ago
Initram issue with virtual sites Topic started 7 years 1 month ago, by Navarro Last Post 7 years 1 month ago by riccardo	Replies:1 Views:2938	Last Post by riccardo 7 years 1 month ago
Molmaker.py issue Topic started 7 years 2 months ago, by lfhjanssen Last Post 7 years 2 months ago by peterkroon	Replies:1 Views:3859	Last Post by peterkroon 7 years 2 months ago
Martinize with side chain fix Topic started 8 years 1 week ago, by flaviyan Last Post 7 years 2 months ago by flaviyan	Replies:11 Views:6248	Last Post by flaviyan 7 years 2 months ago
Issues with cg_bonds.tcl and polarizable Martini in VMD Topic started 7 years 2 months ago, by johnd Last Post 7 years 2 months ago by peterkroon	Replies:7 Views:11.4k	Last Post by peterkroon 7 years 2 months ago
backward mapping for POPC Topic started 7 years 3 months ago, by tkim Last Post 7 years 2 months ago by tsjerk	Replies:1 Views:3215	Last Post by tsjerk 7 years 2 months ago
Visualization of dimer in VMD - cg_helix fails Topic started 7 years 3 months ago, by pakyriak Last Post 7 years 3 months ago by pakyriak	Replies:0 Views:2729	Last Post by pakyriak 7 years 3 months ago

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Tools 311 topics