Tools 312 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
bivariate distribution function Topic started 10 years 2 months ago, by mferraro Last Post 10 years 2 months ago by mferraro	Replies:0 Views:3038	Last Post by mferraro 10 years 2 months ago
Insert a new molecule in insane.py script Topic started 10 years 3 months ago, by Stéfane Last Post 10 years 3 months ago by Stéfane	Replies:2 Views:3637	Last Post by Stéfane 10 years 3 months ago
Advantage of 'Backward' for reverse transformation Topic started 10 years 4 months ago, by anna_duncan Last Post 10 years 4 months ago by siewert	Replies:1 Views:3608	Last Post by siewert 10 years 4 months ago
martinize-2.4 : problem/suggestion Topic started 10 years 5 months ago, by Landry Last Post 10 years 5 months ago by djurre	Replies:9 Views:5952	Last Post by djurre 10 years 5 months ago
lose c-term with protein.pdb to protein.dssp conv Topic started 10 years 5 months ago, by stevesei Last Post 10 years 5 months ago by xavier	Replies:5 Views:4036	Last Post by xavier 10 years 5 months ago
Error in martinize.py (Missing Atoms) Topic started 10 years 5 months ago, by miryawar Last Post 10 years 5 months ago by Clement	Replies:1 Views:5260	Last Post by Clement 10 years 5 months ago
Error when using mdrun Topic started 10 years 6 months ago, by Leliel Last Post 10 years 6 months ago by xavier	Replies:1 Views:3232	Last Post by xavier 10 years 6 months ago
Implementing the Martini Forcefield Topic started 10 years 6 months ago, by TMichaels Last Post 10 years 6 months ago by jaakko	Replies:3 Views:3560	Last Post by jaakko 10 years 6 months ago
Related to create coarse grained model of molecule Topic started 10 years 7 months ago, by satnamphysics Last Post 10 years 7 months ago by satnamphysics	Replies:5 Views:3868	Last Post by satnamphysics 10 years 7 months ago
how to "patch" charge residues in martinize.py Topic started 10 years 7 months ago, by junfeng Last Post 10 years 7 months ago by Clement	Replies:7 Views:4559	Last Post by Clement 10 years 7 months ago
visualizing tools has error Topic started 10 years 7 months ago, by msaeedi Last Post 10 years 7 months ago by Clement	Replies:2 Views:3206	Last Post by Clement 10 years 7 months ago
mdrun error after Reverse transformation Topic started 10 years 8 months ago, by bt12d026 Last Post 10 years 8 months ago by djurre	Replies:1 Views:3655	Last Post by djurre 10 years 8 months ago
error when using g_fg2cg Topic started 10 years 8 months ago, by Leliel Last Post 10 years 8 months ago by djurre	Replies:6 Views:4076	Last Post by djurre 10 years 8 months ago
Salt bridge analysis for CG system Topic started 10 years 8 months ago, by bt12d026 Last Post 10 years 8 months ago by xavier	Replies:1 Views:3896	Last Post by xavier 10 years 8 months ago
Reverse Transformation Topic started 10 years 8 months ago, by bt12d026 Last Post 10 years 8 months ago by tsjerk	Replies:6 Views:4866	Last Post by tsjerk 10 years 8 months ago
Error when grompp Topic started 10 years 9 months ago, by Leliel Last Post 10 years 9 months ago by Clement	Replies:4 Views:4084	Last Post by Clement 10 years 9 months ago
Using insane.py Topic started 10 years 9 months ago, by pela3247 Last Post 10 years 9 months ago by tsjerk	Replies:4 Views:8880	Last Post by tsjerk 10 years 9 months ago
transfer atomic pdb file to CG pdb. Topic started 10 years 10 months ago, by msaeedi Last Post 10 years 9 months ago by msaeedi	Replies:9 Views:6030	Last Post by msaeedi 10 years 9 months ago
molmaker - dihedral type error Topic started 10 years 10 months ago, by Bjiarne Last Post 10 years 10 months ago by Bjiarne	Replies:4 Views:5929	Last Post by Bjiarne 10 years 10 months ago
Related to gro file of surfactant Topic started 10 years 10 months ago, by satnamphysics Last Post 10 years 10 months ago by djurre	Replies:17 Views:7403	Last Post by djurre 10 years 10 months ago

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General Purpose Coarse-Grained Force Field

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Tools 312 topics