unanswered Nucleic acid simulation with Martini3

  • mount
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2 years 7 months ago #9164 by mount

I want to do the simulation of ssRNA with martini3. But, I can find only the parameter of nucleobases (martini_v3.0.0_nucleobases_v1.itp) in the set of force fields 'martini3001'.
How do I treat the sugar part and phosphate part in the nucleic acids?

Is it possible to do the simulation with martini3, or the parameters are still being tuned?
In the Summary_v3.0.b.3.2.pdf, "- New CG models with MARTINI 3: the current list includes all the main biomolecules (lipids, nucleic acids, proteins ans sugars),..." is written.


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