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  3. Martini 3 open-beta

Martini 3 open-beta 47 topics

Welcome to Martini 3's own little forum. Don't forget to post the relevant version number to the questions and/or remarks.

Subject Replies / Views Last Post
unanswered
Marini 3 Charmm36 mapping file for cholesterol
Topic started 3 months 3 weeks ago, by songhd
Last Post 3 months 3 weeks ago
by songhd
Replies:0
Views:795
Last Post by songhd
3 months 3 weeks ago
unanswered
Martini 3 Nucleic Acid Parameters and Mappings
Topic started 7 months 1 week ago, by pcmartini
Last Post 7 months 1 week ago
by pcmartini
Replies:0
Views:848
Last Post by pcmartini
7 months 1 week ago
normal
Protein System tends to collapse while using Martini 3
Topic started 9 months 2 days ago, by mkarroum
Last Post 9 months 2 days ago
by bart
Replies:1
Views:735
Last Post by bart
9 months 2 days ago
normal
System blows up when restarting with Martini3-Go?
Topic started 11 months 2 weeks ago, by smith.12510
Last Post 11 months 2 weeks ago
by smith.12510
Replies:1
Views:798
Last Post by smith.12510
11 months 2 weeks ago
normal
Martini3 parameters for PIP lipids
Topic started 2 years 9 months ago, by anjukris
Last Post 1 year 1 month ago
by Joufflu
Replies:4
Views:6037
Last Post by Joufflu
1 year 1 month ago
normal
Sitosterol Parameters in Martini 3
Topic started 1 year 1 month ago, by Joufflu
Last Post 1 year 1 month ago
by Joufflu
Replies:2
Views:716
Last Post by Joufflu
1 year 1 month ago
normal
Modeling Urea Molecule
Topic started 1 year 9 months ago, by shalinijr
Last Post 1 year 2 months ago
by LiguoWang
Replies:1
Views:1124
Last Post by LiguoWang
1 year 2 months ago
normal
Lipids in Martini 2 vs Martini 3
Topic started 1 year 2 months ago, by pcmartini
Last Post 1 year 2 months ago
by pcmartini
Replies:2
Views:639
Last Post by pcmartini
1 year 2 months ago
normal
logP calculation using martini3
Topic started 1 year 9 months ago, by yogi@martini
Last Post 1 year 7 months ago
by riccardo
Replies:1
Views:2973
Last Post by riccardo
1 year 7 months ago
normal
bulid a cg model for organics molecule
Topic started 2 years 1 month ago, by LeMEI1
Last Post 2 years 3 weeks ago
by riccardo
Replies:5
Views:1830
Last Post by riccardo
2 years 3 weeks ago
normal
How to deal with water in a large system simulation
Topic started 2 years 1 month ago, by Junb
Last Post 2 years 1 month ago
by riccardo
Replies:1
Views:1207
Last Post by riccardo
2 years 1 month ago
unanswered
Advice for ER membrane: Martini2 or Martini3 ?
Topic started 2 years 1 month ago, by ttubiana
Last Post 2 years 1 month ago
by ttubiana
Replies:0
Views:1188
Last Post by ttubiana
2 years 1 month ago
normal
charged small molecule parameterization
Topic started 2 years 2 months ago, by Junb
Last Post 2 years 1 month ago
by Junb
Replies:2
Views:1353
Last Post by Junb
2 years 1 month ago
unanswered
System crash when using more than 5 CPUs
Topic started 2 years 3 months ago, by jpacalon
Last Post 2 years 3 months ago
by jpacalon
Replies:0
Views:15.8k
Last Post by jpacalon
2 years 3 months ago
normal
Arg and Lys Exclusions for Nonbonded Interaction
Topic started 2 years 5 months ago, by mason
Last Post 2 years 5 months ago
by riccardo
Replies:2
Views:1316
Last Post by riccardo
2 years 5 months ago
normal
Martinize2 for Solvated System
Topic started 2 years 6 months ago, by mason
Last Post 2 years 5 months ago
by mason
Replies:2
Views:1663
Last Post by mason
2 years 5 months ago
unanswered
GoMartini issue
Topic started 2 years 9 months ago, by aishwaryts
Last Post 2 years 9 months ago
by aishwaryts
Replies:0
Views:2220
Last Post by aishwaryts
2 years 9 months ago
unanswered
SCFix - Martini 3.0.0
Topic started 2 years 9 months ago, by Marius
Last Post 2 years 9 months ago
by Marius
Replies:0
Views:1436
Last Post by Marius
2 years 9 months ago
normal
Is bbsc.sh script necessary for trasmembrane proteins?
Topic started 2 years 9 months ago, by azadehalavi
Last Post 2 years 9 months ago
by sebastian
Replies:1
Views:2028
Last Post by sebastian
2 years 9 months ago
unanswered
unstable protein-peptide binding with Martini 3
Topic started 2 years 9 months ago, by qiaobf
Last Post 2 years 9 months ago
by qiaobf
Replies:0
Views:1374
Last Post by qiaobf
2 years 9 months ago
  1. General topics
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