Tools 311 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
TypeError with the python script do_fit.py Topic started 4 years 4 months ago, by Hot Last Post 4 years 4 months ago by peterkroon	Replies:6 Views:1870	Last Post by peterkroon 4 years 4 months ago
do_order issue with POPC (solution) Topic started 6 years 2 months ago, by johnd Last Post 4 years 4 months ago by johnd	Replies:15 Views:3074	Last Post by johnd 4 years 4 months ago
Martini RNA both single stranded and double stranded Topic started 4 years 5 months ago, by daniloboskovic Last Post 4 years 5 months ago by daniloboskovic	Replies:0 Views:1250	Last Post by daniloboskovic 4 years 5 months ago
Martini lipid itp generator Topic started 4 years 9 months ago, by z.sichaib Last Post 4 years 5 months ago by z.sichaib	Replies:2 Views:1653	Last Post by z.sichaib 4 years 5 months ago
Problem in rendering CG bonds with VMD Topic started 4 years 5 months ago, by l_karami Last Post 4 years 5 months ago by l_karami	Replies:0 Views:1391	Last Post by l_karami 4 years 5 months ago
Martnini-nucleotide.py add constraints to backbone or manual Topic started 4 years 5 months ago, by daniloboskovic Last Post 4 years 5 months ago by daniloboskovic	Replies:0 Views:1081	Last Post by daniloboskovic 4 years 5 months ago
Martinize error when using pdb with negative residue numbers Topic started 4 years 6 months ago, by andreashlarsen Last Post 4 years 6 months ago by peterkroon	Replies:1 Views:1184	Last Post by peterkroon 4 years 6 months ago
Can not convert my .coarse grained file (.gro) to all atom Topic started 4 years 6 months ago, by Marlet Last Post 4 years 6 months ago by Marlet	Replies:0 Views:1084	Last Post by Marlet 4 years 6 months ago
PIPS, e.g. PIP2 (POP2) and PIP3 (POP3), in insane Topic started 4 years 6 months ago, by andreashlarsen Last Post 4 years 6 months ago by andreashlarsen	Replies:0 Views:1275	Last Post by andreashlarsen 4 years 6 months ago
Converting all atom to coarse grained with backward.py Topic started 4 years 6 months ago, by Hot Last Post 4 years 6 months ago by riccardo	Replies:3 Views:10.3k	Last Post by riccardo 4 years 6 months ago
Inability to use initram.sh and backward.py Topic started 4 years 8 months ago, by jf009 Last Post 4 years 7 months ago by tsjerk	Replies:2 Views:1522	Last Post by tsjerk 4 years 7 months ago
Problems in converting coarse grained to all atom Topic started 4 years 7 months ago, by Diniz Last Post 4 years 7 months ago by tsjerk	Replies:4 Views:2593	Last Post by tsjerk 4 years 7 months ago
IndexError: list index out of range Topic started 4 years 7 months ago, by YAN Last Post 4 years 7 months ago by YAN	Replies:0 Views:1170	Last Post by YAN 4 years 7 months ago
Calculating pressure field Topic started 4 years 7 months ago, by anjukris Last Post 4 years 7 months ago by riccardo	Replies:4 Views:1292	Last Post by riccardo 4 years 7 months ago
Missing beads def in force field for ribonucleoproteins Topic started 4 years 7 months ago, by daniloboskovic Last Post 4 years 7 months ago by daniloboskovic	Replies:4 Views:1439	Last Post by daniloboskovic 4 years 7 months ago
conversion from cg to all altom cotaining a system popc popg and protein Topic started 4 years 7 months ago, by cm Last Post 4 years 7 months ago by cm	Replies:6 Views:8570	Last Post by cm 4 years 7 months ago
backmapping of Cholesterol molecule from CG model to atomistic Topic started 4 years 8 months ago, by shwetaa7 Last Post 4 years 7 months ago by riccardo	Replies:1 Views:1400	Last Post by riccardo 4 years 7 months ago
Problem using initram / backward Topic started 4 years 8 months ago, by jf009 Last Post 4 years 7 months ago by riccardo	Replies:1 Views:1995	Last Post by riccardo 4 years 7 months ago
insane.py -pbc Topic started 5 years 6 months ago, by Newguy Last Post 4 years 8 months ago by SNEHA	Replies:3 Views:2515	Last Post by SNEHA 4 years 8 months ago
Computing the volume of a pocket in time Topic started 4 years 9 months ago, by z.sichaib Last Post 4 years 8 months ago by xavier	Replies:1 Views:2151	Last Post by xavier 4 years 8 months ago

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General Purpose Coarse-Grained Force Field

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Tools 311 topics